Scaffold Ga0116218

Basic Information
Taxon OID	3300009522 Open in IMG/M
Scaffold ID	Ga0116218_1001403 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009522 Open in IMG/M

Scaffold ID

Ga0116218_1001403 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15316
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (88.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15316

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (88.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.1318	Long. (^o)	11.881	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.1318

Long. (^o)

11.881

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F017708	Metagenome	239	Y
F017965	Metagenome / Metatranscriptome	237	Y
F020070	Metagenome	226	Y
F029198	Metagenome	189	Y
F105941	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116218_100140312	F017965	GAG	MIDLTDMSENIGHRDALYLFACHLEWHTRRNLAAYQDLLAALDDHDCDTRLLAESLLHRSWPRPERTATFVESW*
Ga0116218_100140314	F029198	AGGAG	MDSENNSKAVRVAGEVMVLHCWACGSAHCVNLELCVPGELSHMVCSNSNCGMSMFLVNELVVDDKTRKQMTKSEVNAHVTYSRFWK*
Ga0116218_100140323	F020070	GGTGG	MPASNTHLISASVALPSVDGGCASSIVACGCVFVVIGAYCFCPSVFAQTSDSPTAEQPTKSWAATTDLKSDNLLPERIPVRIIESHSQNGNRTLDKRSVEIRGTDGHFEPYQDIERETLTVDPSTVKTTKRTFALDVNGRKALVQVTEEEKHILPSNNSNIVRVTYNPDLNGGLQAVQREIVETKNISKDVEETNTTLMLPSINGGLAPAFKTLELRKRAANDMVETEKTTWLPDGNGKWKLGEIRQNTTTQEGKAGRIEERVFRPDAEGKLGEICRVVSNESESTTGEESSVVETYSIDVPGATQDGSLHLLERKTSTESSNAAGERATEQKVEQTDPGDPGSGLRMSVLIDGRMVPGPSGEYSTVTIRARDSNGNFGIVSVDTTKADRIPTVQIQQTPAQKP*
Ga0116218_10014033	F105941	AGGTGG	MWKITTRGFTLQEVLIMAAMNVASVLIATDKSERTTGTARRTEIQQDLGDCHGKGD*
Ga0116218_10014034	F017708	AGGAG	MAKVIEFYIPKNFRKPLRTAAQPQLGKIIEFCSQTKRSA*
Ga0116218_10014038	F001596	AGGAG	MSWFHASTPAADARNHASAAEIVACFPDQRNLLYRLAFLITADEAIAEQAVAQACEITLQGNSPFRNWLLEWAKAATIAAATSLQGDAIRLCETTYKDRRCPHVEHLCQFDDEQRTASLALILQMDTQKIIAELDPLCRAILVLRIAIRSSIQDCSLRLNVSRAAVLAANCHTMTWLDHCHVKPLEDDHNVSHAL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116218_1001403

Overview

Ecosystem & Geography

Associated Families

Sequences