NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116218_1001403

Scaffold Ga0116218_1001403


Overview

Basic Information
Taxon OID3300009522 Open in IMG/M
Scaffold IDGa0116218_1001403 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15316
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F017708Metagenome239Y
F017965Metagenome / Metatranscriptome237Y
F020070Metagenome226Y
F029198Metagenome189Y
F105941Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0116218_100140312F017965GAGMIDLTDMSENIGHRDALYLFACHLEWHTRRNLAAYQDLLAALDDHDCDTRLLAESLLHRSWPRPERTATFVESW*
Ga0116218_100140314F029198AGGAGMDSENNSKAVRVAGEVMVLHCWACGSAHCVNLELCVPGELSHMVCSNSNCGMSMFLVNELVVDDKTRKQMTKSEVNAHVTYSRFWK*
Ga0116218_100140323F020070GGTGGMPASNTHLISASVALPSVDGGCASSIVACGCVFVVIGAYCFCPSVFAQTSDSPTAEQPTKSWAATTDLKSDNLLPERIPVRIIESHSQNGNRTLDKRSVEIRGTDGHFEPYQDIERETLTVDPSTVKTTKRTFALDVNGRKALVQVTEEEKHILPSNNSNIVRVTYNPDLNGGLQAVQREIVETKNISKDVEETNTTLMLPSINGGLAPAFKTLELRKRAANDMVETEKTTWLPDGNGKWKLGEIRQNTTTQEGKAGRIEERVFRPDAEGKLGEICRVVSNESESTTGEESSVVETYSIDVPGATQDGSLHLLERKTSTESSNAAGERATEQKVEQTDPGDPGSGLRMSVLIDGRMVPGPSGEYSTVTIRARDSNGNFGIVSVDTTKADRIPTVQIQQTPAQKP*
Ga0116218_10014033F105941AGGTGGMWKITTRGFTLQEVLIMAAMNVASVLIATDKSERTTGTARRTEIQQDLGDCHGKGD*
Ga0116218_10014034F017708AGGAGMAKVIEFYIPKNFRKPLRTAAQPQLGKIIEFCSQTKRSA*
Ga0116218_10014038F001596AGGAGMSWFHASTPAADARNHASAAEIVACFPDQRNLLYRLAFLITADEAIAEQAVAQACEITLQGNSPFRNWLLEWAKAATIAAATSLQGDAIRLCETTYKDRRCPHVEHLCQFDDEQRTASLALILQMDTQKIIAELDPLCRAILVLRIAIRSSIQDCSLRLNVSRAAVLAANCHTMTWLDHCHVKPLEDDHNVSHAL*

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