Scaffold Ga0116214_1000231

Overview

Basic Information

• Taxon OID: 3300009520
• Scaffold ID: Ga0116214_1000231
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22927
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025342	Metagenome / Metatranscriptome	202	Y
F029197	Metagenome / Metatranscriptome	189	Y
F086999	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116214_10002311	F029197	N/A	GDWFGELRDDNHAKPPGDGHAEPDGTDDPWPEILAQADARVEAPGEAAVMPAEVMTTCLETGPEQPAITTSPASAKPLTAMQRNRPRPLEVTQCSMCGIALPLGLLVPDGGQACADIRWYCKDAMSCTERWTTARPPGRAQTPTAPGNAFAGAGEAVPDRASAERLGSMFEAAQPAV*
Ga0116214_100023120	F025342	AGGAGG	VNRWEATSPYEWSGAWEGRLQIACGYGTKTDVCGHLHGSSTEAERCAHELAARLNSKPTPFDSRLPHRMPSDYYLG*
Ga0116214_10002319	F086999	N/A	LFLTSRRSQVTRSTLAIGAGTSLVFGVVMYAVAPLGLTNDATDPWLPGSTADPLVALAWILLIGGPAAAATLAAWRGRGPGGTPLPRNVSFGQGIAAGVPANGTAAMFVSALGTGTTALMLRSAWLLHWLNHGHQLTAIATYRYETNAAGGAAT*