Scaffold Ga0116108_1001047

Overview

Basic Information

• Taxon OID: 3300009519
• Scaffold ID: Ga0116108_1001047
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14863
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1.5 to 1.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032938	Metagenome / Metatranscriptome	178	Y
F036810	Metagenome	169	Y
F045709	Metagenome / Metatranscriptome	152	Y
F070426	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116108_100104711	F032938	AGGAG	MQKFLVVSYDDDQQQWFWDYVAAKRAEDAVAHVCERRPYVIAADAASLSQVQGIARDMKSRSIARIIHQFNSDTATAKE*
Ga0116108_10010477	F036810	N/A	LARATAKCRAVQLSIERRSFERKLETIVRAANAHHSCGQSPGTAQFKLLRECADDLCSHFAQSWDISPELLEAQIPAITKLKSLADPPTKPEPLALVSLGVAGAVALFFLMGVLAGLASVGYHLIGGR*
Ga0116108_10010478	F070426	GGAGG	MILELIVAAEASALSASWIRRSRMRRQEILMSGSTSEINLPFLDQYLRQQTANPTKLQTFAAQKLAAVCRRAVHTGAFELLVLKLIQSASRRYRRESEISKVEVIL*
Ga0116108_10010479	F045709	GGAGG	VNLTPSQKGSFLAGVGLWVLIWASVWKADDIAEAMRIQRWFNATRCLRWIGQHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLFLPCLEKLLRQKGTASATLQ*