NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116128_1001165

Scaffold Ga0116128_1001165


Overview

Basic Information
Taxon OID3300009518 Open in IMG/M
Scaffold IDGa0116128_1001165 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11882
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F004823Metagenome / Metatranscriptome422Y
F006278Metagenome / Metatranscriptome377Y
F006399Metagenome / Metatranscriptome374Y
F029198Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0116128_10011651F001596AGGAGMSWFHSSTAPVDARNHASSAEVVACFQDQRNVLGRLAFLITGDQATADQAVVQACEITLQGNSPFRNWLLEWAKAATIASAISHGTEAIRICEAAYKDRRCPHVEHLSQGDAEERAPSLDLILGTDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVS
Ga0116128_10011652F006278GAGGMFRAEIQWLASGPTLKLEGKLVADWAEQARCLVTKDVLPKGLIVDLTELSYIDSVGEQLLKWLASVGALFVAGSVYASAVCDRLRLSPMQRTAERRKRRHGSNGERSSIKHSHPVEAI*
Ga0116128_10011655F006399GAGGVKYLPRFQMEDEWQAICSLIGRCTMATPALNSQVQSLVAEYSVFWQFWPQFEQIHGERRLVGFELELIGSHTSDLNHLDPACPACRHVRSVLLAIALAMPRETSFRRNYLTYNIDSHSNSILCLPALGNRSAVSVSIYVVWNRSDGQSFETDLLSEIKAFLNGWGIHQR*
Ga0116128_10011657F029198GAGGMDSKPNSGPVRVHGEVIVLHCWACGTAHYVNQELCVPGELSHMVCSNSNCGMSMFLVNELVLDDKTRKQMTKSELNARVTYSRFWK*
Ga0116128_10011659F004823AGGAGMYATKEVNGVPAIQRDGQSVLSVCDQDWEFANWLCALLNELGRKSELLLNEQDWEWLNAIDRPFRRTAQHA*
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