Scaffold Ga0116128_1000821

Overview

Basic Information

• Taxon OID: 3300009518
• Scaffold ID: Ga0116128_1000821
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14641
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (100.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1.5 to 1.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F004817	Metagenome	422	Y
F005112	Metagenome / Metatranscriptome	411	Y
F007120	Metagenome	357	Y
F008540	Metagenome	331	Y
F015428	Metagenome	254	Y
F020126	Metagenome	225	Y
F057060	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116128_100082111	F002761	AGGAG	MVWVTLGKVNELVHFIGFKKANPRQTVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNAFMVTFIVPIWCRLSKLESR*
Ga0116128_100082112	F007120	AGGAGG	MKTLIITLSAACAVVAAYFGVRHLTHRDLGFTPARKYVRNLAENLLHTEVTAAQEAGTVPEATSEQPA*
Ga0116128_100082113	F005112	AGGAG	MSLITRYRLFWAALMAALLGLAFWKNSQSYPHKSRLWRLGKAAIDTGTVMLMVVYAPALLLMYVVVWLTSPFRNKIIQVSAAFASILAITHLAGVVFEAVAVLGVFAVDLLTGQVVARMDRRERNKLAKAA*
Ga0116128_100082115	F020126	GAGG	MNRLANLALSVGETLVHEAARLLFGIALGWANELLGTPQPLGTRQLALNRALQKKSVDGALLEGSRTGKEYAKFALKKGLPTDQRPST*
Ga0116128_10008214	F008540	GGAGG	LRTYQPEYALIARETREENRKQLADMLSQIATERAARLPPPPRSPVSLETQFQETIRKTREDIQRAKDVQAAHILRWLRS*
Ga0116128_10008215	F057060	AGGAG	MRFRHPRQPGEESDPKVNFGVYELSARLEHAGVEYLRIALGKDAHSFELASAVLTLGAIEGEGPSEGIWHPAIHWVRDDGFYAVCLRERMPYRDACHLFGFDIPAGKPSVPKRIKRDVARGKTSLFGELLDTRQLNEWDLLHTVILADGETTFEVATYNPGNRWPEAWTSGAALASPRGGAILTGHQVQIGDMIQITGAMPNGQIKGNCLIWDIEPDLVVWDVKPELRAWEGQIYLSVLNELHGGLANLDVQTASNLDLAKVRDHKLIQYLCQQFACDVFDVMRDDDRVKEEIGFYNPASWVDEDGNSVMNENRWKLWRMYSAGLPAMQFRTCRDAFYRTQMESPENNNPDRFRMRFREPGDLMKVQSNDLAGAAVRRYIFPEPFVFDEKGYPHWERSTLPDVNSVYLGGFDGEFISLRNPNASHKESGKLRGRKLQRFAGIDRGAAMFVHLGFAASPDGTPGMAKSFNGADFDDSVLALLDPEIVRHWKTLPAYPWSVAKPAGVKVIDDGDALFDRNPRIPVYDQRYVLCMLYDAKRGQTGIGYVVNAITWFNLLWLNRESIVSELRAMPPSPQVAEAIRWMEQELPKSQMPMVASRLEEIIDSIKMNGKSVDWANGLITEFRDTCPVAPKFWWKGGYLGQGRIPRDRIENGNEPIPVTTSMDVAHAQWIELFQKARMFADKESWRHCWQVPPEIRRFPTRPEAKAAARDFWLFYNQTREAKKLEFLRTGEDHRGKKIMSEQDAGIAAYLYAEEEVHNRIKASGMYLDIYAELVKLIFDRALTLEPPHNPDGTLKPIADGILGGPHTLDGLLDIARAAGVTRSHVPLTWESARVRADYGDLNLDIVVEDTLVRIAGTSAKSANWIGIVDLPDGQYRTEHGLVVTKDTIEAPPQEPAVALVAVNGFEQRLKDQSLQRADRKRIEAELKAFRAQVCNGVTIKPVTYHNPESQEDEPGAEVFLEGSSEPFGWIAQEHLPAVTRQLKGVLVSGGQYSLKVLCPLSEQALNC*
Ga0116128_10008217	F004817	AGGA	MPNSAAVVQLPEILRNKSSHLVKLAGKVDSFSLLLRDTPEGELKRSIEEQFHAMVFATRKEIRRYCPRYRSLPGEGILDFNTDCNSGQLDPGDLGKAPPPKRGSLCETCFFFVGIPEEQVSQMTVSPTSQDLVFAV*
Ga0116128_10008218	F003859	AGGAG	MDELKAERSSTPAHSWPGASLYDSLKLAWHWRRLRWAVVAASEAAQGHEANGLPPGSKEFKTLFKEAACKVQEYSAESGEPLETLRARLPALCALERLANPTATMPRNKAGLTLGILTAAILGPTTIGALIGLGTGMAHWIAHLFA*
Ga0116128_10008219	F015428	AGGAGG	MTGILEMFALVEMGSGIGFLVRWRGRLLASKVNYFRPQHNRKSLIDKLVRAQTGPVITRQDRLCLKLADGLTVLIRRLVILDAFRQLIRALALPNSPLRRKLRSKRMLT*