Scaffold Ga0116128_1000305

Overview

Basic Information

• Taxon OID: 3300009518
• Scaffold ID: Ga0116128_1000305
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29211
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (70.73%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1.5 to 1.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F007120	Metagenome	357	Y
F011572	Metagenome / Metatranscriptome	289	Y
F015428	Metagenome	254	Y
F019075	Metagenome	231	Y
F057060	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116128_100030522	F011572	GGAGG	MDTNQIFTSLFGNWLTAADKAAAATINYTKSTVLPRVSDLTQKATLATGKTLVKVGTKLTDCCTTE*
Ga0116128_100030523	F019075	GGAGG	LRIFQPERALIAREIHEERRRELNAMLSQLPQRRADRLPAPPPLSLEAQFQRTIVNMRDNVQRAKDVQSTHILRWLRS*
Ga0116128_100030524	F057060	AGGAGG	VNYQHLHYQFPAEPFQRWHVIEDRSLPHPLRFRHPCKPAEKPDPKVNFGVSELSARLEHAGVEYIRIALGNDAKSFDWAFCMISGALPGVEVPGDGHWYPVIPWVRDDGFYAVGMREPMPFRDACHLFGFDIPAGKPSVPKRIKRDVARGLTSLFGELIETRQLNQWDLLHTVMLADGKTTFEVATYNPGNRWPDAWTSGAALASPRGGAILTGHPVQIGDLIQITGAMPNGQIKANCLIWDIEHDLVVWDVKQELRAWQGQIYLSVLNELHGGPAHLDVQTASNLDLAKVRDHKLIRYLCQEYACDVFDLMRDDERVKEEIGFYNPASWADEDGNPVLSENRWKLWRMYAAGLPAMQFRNCRDAFYRTQMESPENSDPDRFRIRFREPQDLMTVKADELAGAAVRRYLFPEPFVFDKQGYPHWERSTLPNVDSVYLGGFDGEFISLRNPNASHRESGKLRGRRLQRFAGIDRGAVMFVHLGFAASLEGAPGMAKSFNGADFDDSVLALLDPEIVKHWKTLPEYPWVMATPTEVKVIDDGDALFDRHPKVQEYDDYYVTCMLNDAKRGQTGIGYVVNAITWFNLLWLNRESIVAELRRMQPSSQVAAAIHWMEEELPRSRMPMVASRLEEIIDAIKLNGSSINWVSGVITEFRNSCPVAPKFWWQGGYQGQGRIPRDRLENGNAPIPVTTPMDVAREDWIELFQKARWFADKESWKRCWRVPPEIRSFPTRPEAAPAARDFWLFYNRTREAKKAEFLKAGKDHRGKKVTSEQEAGIAAYLYAEEEVHNRIKASGMYLEIYAELVKLVFDRGMTLEPPRNPDGTVKPVADGILGGPHTLDGLLDISRAAGVARRYVPLTWESERVRADYGDLSLDIIVEDTLVRISGSTSNSTSWIGIVDLPDGQYRVEHGLVVTEDTSEGPPQGPAVALLAVNGFEQRLRDDRLKQEDRQRIEEELKAFRAQVCNGVTIKPVTYRNPETEEDEAGAEVFLEGTSEPLGWISREHLPLVRSELTGVLVSGGQYTLKVLCPIPVQGTHS*
Ga0116128_100030526	F003859	AGGAG	MDEQNTPKGTSLDRTSTPGSSWPGANLYRSLKLGWQWRRLRWAVVAASEAAQGHEANGLPPGSKEFKTLFDEVVRKVQEYSTESGDPLDTLQARLPALCALERLAYPAPTVPRNKAGLTFGILSAAVLGPIGMGALIGLGAGMAHWIARLFG*
Ga0116128_100030527	F015428	N/A	MGSGIGFLLRWRNRLLASKVNYFRPPHNRKSPFDKLVRAETGPVITRQDQLSVKLADGLTAIVRRLVMLDAFRQLMRALALPHSPLRRRLRGRRRLS*
Ga0116128_100030529	F002761	AGGAGG	MTFTPSATSSFSAGAVFWGMVWATLGKLNELAHFVGFKKAHPRKAVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNLCMVTFIVPIWCRLSKLESH*
Ga0116128_100030530	F007120	AGGAGG	MKNLIIILSAACAVVAGYFGARYFTRRDLGFTSARKYVQSLAKNLLHTELTAAREAGATSATTTE*