Scaffold Ga0116128_1000142

Overview

Basic Information

• Taxon OID: 3300009518
• Scaffold ID: Ga0116128_1000142
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51590
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (65.96%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1.5 to 1.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001289	Metagenome / Metatranscriptome	730	Y
F001878	Metagenome / Metatranscriptome	623	Y
F011616	Metagenome / Metatranscriptome	289	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116128_100014213	F001878	AGGAG	MSAPSRRPEIRRRRTRAEKIAKLRKRLAAASASTDKDRLTAKLHRVGLVSPGNPLIKSA*
Ga0116128_100014239	F001289	GAGG	MKNPYEVLRMKEQEMLRVRKEMDALRIAARLLGAEDPGAANGEGQPKLQRVVEMP*
Ga0116128_10001424	F011616	N/A	VNAPVSPKPVADNKHQDNKHQHRHSIYAAEATGLLLMAVLLLVLTIIRYWRYIPWSAR*