Scaffold Ga0116128_1000117

Overview

Basic Information

• Taxon OID: 3300009518
• Scaffold ID: Ga0116128_1000117
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57080
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (79.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1.5 to 1.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002552	Metagenome / Metatranscriptome	549	Y
F006156	Metagenome / Metatranscriptome	380	Y
F010557	Metagenome / Metatranscriptome	302	Y
F028251	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116128_100011715	F010557	AGGAG	MNEDRTNLNTALERYLKSGRQFGEGEKFYLLGFEAALHARNRCKEFDQIASEMTSDLEELQQQYPRVAVEEPFTSGFQQGREYYQRLCDESNPA*
Ga0116128_100011716	F028251	GGA	LDKAREPRRRVKEDAVVKQMVDPSGIQYAVIEGLRTETGPERLVIAYPDEKSLRELIAAASIIAVGFSSREEAVAGGRASVPAGIYRQQMRETIAVGGTFGHRRRLSWAERPGEIGSTVQRLGRFLVTSYSNAATAVIAIFLSRNAVSAVIRMALGSFA*
Ga0116128_100011729	F002552	GGA	MFVRPGEEKTEMNSNYMFLCGVTLCKFGQKEAGKELLRAAKSGDPDMSALAWAMLAKGVRRLRDLERRAQTSSRTILEASLCG*
Ga0116128_100011732	F006156	AGGAG	MKQVKYVAFLSMVTLLSSVFALAGDKNQRSVQIPNSVQVGGSQLQPGNYKVEWQGTGPEVKVNFVRDGKTVATVPGTLKAHDDQVTQDEIVTDTTSANVQTLTEIDFRRTKEALVFEQSGM*