Scaffold Ga0129286_10434749

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0129286_10434749

Scaffold Ga0129286_10434749

Overview

Basic Information
Taxon OID	3300009515 Open in IMG/M
Scaffold ID	Ga0129286_10434749 Open in IMG/M
Source Dataset Name	Microbial community of beach aquifer sediment core from Cape Shores, Lewes, Delaware, USA - CF-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Delaware
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	503
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Microbial Role In Biogeochemical Cycling In A Beach Aquifer System

Source Dataset Sampling Location
Location Name	Cape Shores, Lewes, Delaware, USA
Coordinates	Lat. (^o)	38.7855	Long. (^o)	-75.1045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F093726	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129286_104347492	F093726	N/A	IGHMRSVYGLTGDLEYPSRKHSQQDSEGNWLLISFNGHKMGKVLKNGKVIA*

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