Scaffold Ga0129286_10215333

Overview

Basic Information

• Taxon OID: 3300009515
• Scaffold ID: Ga0129286_10215333
• Source Dataset Name: Microbial community of beach aquifer sediment core from Cape Shores, Lewes, Delaware, USA - CF-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Delaware
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 655
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Microbial Role In Biogeochemical Cycling In A Beach Aquifer System

Source Dataset Sampling Location

• Location Name: Cape Shores, Lewes, Delaware, USA
• Coordinates
  • Lat. (^o): 38.7855
  • Long. (^o): -75.1045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012873	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129286_102153332	F012873	AGGAGG	MSLKALLRAGKELLKAKKPSATPTTGQQQRQITYEPKPSQAQAKELVTQELKNPPVVLKKTKPLQMGDDMAPAFGSSTYDWAMRMGRSKYTADEWLDHLTSTRKVNFKIFGKPAQK