NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129286_10081171

Scaffold Ga0129286_10081171


Overview

Basic Information
Taxon OID3300009515 Open in IMG/M
Scaffold IDGa0129286_10081171 Open in IMG/M
Source Dataset NameMicrobial community of beach aquifer sediment core from Cape Shores, Lewes, Delaware, USA - CF-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Delaware
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)936
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Microbial Role In Biogeochemical Cycling In A Beach Aquifer System

Source Dataset Sampling Location
Location NameCape Shores, Lewes, Delaware, USA
CoordinatesLat. (o)38.7855Long. (o)-75.1045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023488Metagenome / Metatranscriptome210Y
F069469Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0129286_100811711F023488N/ATRRSVFTAKLGNTNRLRMSEGFKLASNSPTAPFIHGTPIYRGFSPVKRTKPFFPPYKEGSSLAKWAKRGTPKLNPFLVARAISKRGLKMKPFIGGVVYEKQKEIKAGAEDMLESIARDIARSVK*
Ga0129286_100811713F069469GAGGMKVKILIGSDFSLDKKDKRVEAGEVLDLPDKIAKALIKNNAAEKFDSKMM

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