Scaffold Ga0115003_10120156

Overview

Basic Information

• Taxon OID: 3300009512
• Scaffold ID: Ga0115003_10120156
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1607
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006684	Metagenome	367	Y
F009110	Metagenome	323	N
F030097	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115003_101201561	F006684	N/A	IIASALALGLLNHAINKAQDHIETLAEVLVHHADTLEDHRGVLLQMIDDRTLPYM*
Ga0115003_101201563	F030097	N/A	MKALDIAGTQTKVSSCMGFVASGAARDAYRRLLTASTVGQSKGEQRKSVFSRTTKEKVKK
Ga0115003_101201564	F009110	GAG	MTESMITSAVRYMESLKDKVPPAGEEVITVKQKRPDTPHLKTLGLDPHKMVKAVDKLKAKGLEVKDACEQVGMTRSQYYKTKKGTTNRK*