Scaffold Ga0115003_10036322

Overview

Basic Information

• Taxon OID: 3300009512
• Scaffold ID: Ga0115003_10036322
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3185
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028624	Metagenome	191	N
F051967	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115003_100363224	F028624	AGGAG	MIPCPECDHTDYHGKVEKEVHQRFGGTLEPVGEWIDCDYCNGSGEVEEEDDG*
Ga0115003_100363227	F051967	N/A	MKFAINQNGAIAPHPPSNGDHPMLPRTAQSHTPLRTSKSRHTWCGPYAVAVFLRQNYDAAYDACLQFTYRGKITGMSNSLMKVVMGANGIQMTFHYKREIGSYARDNATLAAWLKTRDRKKTYLVNITGHYIVVSGDKTIDNQSGEWHSVRKSKHRRKRVAYAWEIKAPH*