Basic Information | |
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Taxon OID | 3300009512 Open in IMG/M |
Scaffold ID | Ga0115003_10018076 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4746 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (16.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 79.2466 | Long. (o) | -150.0613 | Alt. (m) | Depth (m) | 25 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F054361 | Metagenome | 140 | Y |
F060349 | Metagenome / Metatranscriptome | 133 | Y |
F072850 | Metagenome | 121 | Y |
F092866 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0115003_1001807610 | F072850 | N/A | MKLNELEILEDDFDLFVALDDHDKIQFLFDATQIGIEAAIVKQVGQLADKYIPKEPLVSVTDFQVGPFRLSLTQYPDKLHINSNSLKAIRKFVQKLVNDGMLLSRVDVKKTEFDMYRYLRVYDIIGKVDPYCNN* |
Ga0115003_100180764 | F060349 | N/A | MNKHQKKVLKQYPNAYAEASLDGVRIISNDVFLAAEFYMPNTSDEEVAWEHAAMSCRLTQNFNRAHPARMDLVDVEGKLNRIHKRKRRGRRVK* |
Ga0115003_100180766 | F054361 | N/A | MGGFVNNTAAYDQKKVRKYGKLYGSIDFEISDITAHTFENHEKPVVGKLHIGTKTYDVTYQELDMIQKTLQLAKDTVNRKYKMGMMR* |
Ga0115003_100180767 | F092866 | GGA | MGFHKRYINDGQIINIYRKNGCQAVIDWFTRGADAIITSGVLAEEVNHLLNILPHDNVKGWNRISEVISDASIVKGFES* |
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