Scaffold Ga0115003_10018076

Overview

Basic Information

• Taxon OID: 3300009512
• Scaffold ID: Ga0115003_10018076
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4746
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054361	Metagenome	140	Y
F060349	Metagenome / Metatranscriptome	133	Y
F072850	Metagenome	121	Y
F092866	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115003_1001807610	F072850	N/A	MKLNELEILEDDFDLFVALDDHDKIQFLFDATQIGIEAAIVKQVGQLADKYIPKEPLVSVTDFQVGPFRLSLTQYPDKLHINSNSLKAIRKFVQKLVNDGMLLSRVDVKKTEFDMYRYLRVYDIIGKVDPYCNN*
Ga0115003_100180764	F060349	N/A	MNKHQKKVLKQYPNAYAEASLDGVRIISNDVFLAAEFYMPNTSDEEVAWEHAAMSCRLTQNFNRAHPARMDLVDVEGKLNRIHKRKRRGRRVK*
Ga0115003_100180766	F054361	N/A	MGGFVNNTAAYDQKKVRKYGKLYGSIDFEISDITAHTFENHEKPVVGKLHIGTKTYDVTYQELDMIQKTLQLAKDTVNRKYKMGMMR*
Ga0115003_100180767	F092866	GGA	MGFHKRYINDGQIINIYRKNGCQAVIDWFTRGADAIITSGVLAEEVNHLLNILPHDNVKGWNRISEVISDASIVKGFES*