Scaffold Ga0115003_10016351

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115003_10016351

Scaffold Ga0115003_10016351

Overview

Basic Information
Taxon OID	3300009512 Open in IMG/M
Scaffold ID	Ga0115003_10016351 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5025
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	79.2466	Long. (^o)	-150.0613	Alt. (m)		Depth (m)	25
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064880	Metagenome	128	N
F085895	Metagenome / Metatranscriptome	111	N
F092352	Metagenome / Metatranscriptome	107	N
F094097	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115003_100163513	F092352	N/A	MNIIATTLKSIIEAQGLTYLRAANPNDLNELVGNYDLSNGVGVYANLPTVSNTMYAQTNNVLMEYGVEVYYLKLSTGTDDTATQIDVILDALKPKVDGMMDKLNASGIVALSTYIDDYELEAIESINITSEVLSGWKLSFSIPIFRDTFECA*
Ga0115003_100163515	F064880	AGGGGG	MKRFKIHHEDDIIGAQIPDSWEELTVKQWAALRPNVSDLELLSVLSGIDLSYLENTRADLSPAIEHVYQSIKDMPEDLNHLARKPLSILGHQIKFPKDINFARYGQKAMLKNAIQGAEDMREIVSDVIAIYAQPSIDGKFDSAKLEPIKKAIDNLPIIMAWPWAVFFLRKLSALKRTYLADWRQSQ*
Ga0115003_100163517	F085895	N/A	MNVEEALQLLEARVEEDIEELTPKDRLLFWANLLEFKKAKIQRIPFLVPENDAKIIIEYEDYTIKTHASIPKPVAKPEED*
Ga0115003_100163519	F094097	N/A	IEKIHLPTYLMNHTMTKLSRQENQGIRLPLSTSLSTILLEVKEKKEVQMALSGAMYGVANLYSDVDIQALTATMDAFYREFKYEPLSVFVDVINDYKTGKVKVFGRITPNQIRESIMDKLDKIARERENTHLDLKGSQGVRSTLTLREALAKVTTQK*

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