Scaffold Ga0115003_10010430

Overview

Basic Information

• Taxon OID: 3300009512
• Scaffold ID: Ga0115003_10010430
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6522
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Anaposvirus → Synechococcus virus SCAM1 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051984	Metagenome / Metatranscriptome	143	N
F068729	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115003_100104304	F068729	N/A	MTDQREILNQYEFEMEIPNEPYVDNFSQGITHTAYYAGDRYLKFAVNDSTGIIGECLHRAPTKELLETRISHLEPGHTALIIDGAKNPWEASYLTRVYNHEPVPYYQEDVGQLDDDGNSITWEYNWGHVLNQIYYNQELKYINGEFVKPRFRVHQHTNEKVHQTVLDHIEMCDNELSRLVYVESQRQAIEKCKAGWINIRDNFPHVHHWKLKYPDMPLIKP*
Ga0115003_100104307	F051984	N/A	GGIGGHSWCSTGNSIYCCAVASGFCNTQGGDAYCGIICNFMDSAACPQFCAFAYGGDTNCYGGFSCYYFRGCQPNCNCRQVPVNRFPPGMISTLGGEVHYTMDSDNGRSQWSGMGGWMNASHGFNLATRNPTTGGPYTGCWEGNRMCGCYDQQGCNSYYPAGIGGQGPTPCDGVRDHAHRGGHGLVRIKFVSTTDDYEIDSTP*