Basic Information | |
---|---|
Taxon OID | 3300009512 Open in IMG/M |
Scaffold ID | Ga0115003_10010430 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 6522 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Anaposvirus → Synechococcus virus SCAM1 | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 79.2466 | Long. (o) | -150.0613 | Alt. (m) | Depth (m) | 25 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F051984 | Metagenome / Metatranscriptome | 143 | N |
F068729 | Metagenome | 124 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0115003_100104304 | F068729 | N/A | MTDQREILNQYEFEMEIPNEPYVDNFSQGITHTAYYAGDRYLKFAVNDSTGIIGECLHRAPTKELLETRISHLEPGHTALIIDGAKNPWEASYLTRVYNHEPVPYYQEDVGQLDDDGNSITWEYNWGHVLNQIYYNQELKYINGEFVKPRFRVHQHTNEKVHQTVLDHIEMCDNELSRLVYVESQRQAIEKCKAGWINIRDNFPHVHHWKLKYPDMPLIKP* |
Ga0115003_100104307 | F051984 | N/A | GGIGGHSWCSTGNSIYCCAVASGFCNTQGGDAYCGIICNFMDSAACPQFCAFAYGGDTNCYGGFSCYYFRGCQPNCNCRQVPVNRFPPGMISTLGGEVHYTMDSDNGRSQWSGMGGWMNASHGFNLATRNPTTGGPYTGCWEGNRMCGCYDQQGCNSYYPAGIGGQGPTPCDGVRDHAHRGGHGLVRIKFVSTTDDYEIDSTP* |
⦗Top⦘ |