Scaffold Ga0115003_10000565

Overview

Basic Information

• Taxon OID: 3300009512
• Scaffold ID: Ga0115003_10000565
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32663
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F017335	Metagenome / Metatranscriptome	241	Y
F022460	Metagenome / Metatranscriptome	214	Y
F076611	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115003_1000056518	F022460	AGGAG	MATVKNDRTGFPSLYRATYEEGWQLKNTGFDYSKGFLRNMMGKQMFRNRHLAEFLDDYLSPIMLFYINKVKYLRIYYNFAVPKWYQKIN*
Ga0115003_1000056523	F076611	N/A	MAEKLLDKASYSLVRTNPKLTGNVKVVSDGTDIYLESFSANTRLASQKFKAFKVDGSSTYDRDVFRFFDFGKFPKEAAYEIFQEYEDDAVLSKYGNQYEMFYCAGTRSVASEAYSQSLATLAPLWLNDQMPNYFVVFRLDNPAAVNNFRAATENANTVNAQTSAEFSKNVLENCTAIKTFDLTESTPLGSYIRNYRNQETFPEVPLNVSWRKDEPILWNGISYKSGGFTSTGNFAYNDIIGKDSTIIQDEYLFTQGFQNNGILLANLLNMEFLFDDPTAEDYSINRYFGMYVNDIEEGRFDISGEAFYKNTEKTQLPKITTITEVSQDLNTPFTITNEQGILLFLDPLKTETITGLPTPTRVDEVESIFYVKDKEDDFHTIKKGAIWGKNQIRLFDTEVDVSLFTGYKDPDTFANASIINRAGVAQMYIKVLDNIEDGFSITFYDGSSVTGKIFANSTLAPIPGKSFERFFNPSGTIQEVAQSITSAINNGIDENVRFFVASYNDSTVYVKSRFSGNRFNRMGFLLDIQFPEAFSQLQTYPLTTLVSPSNTFVGGNDVKNSLLKVELGDQDRFTPGEFVQTTGGYAVIGDWVPYTDEPIYNGFNEIIGYTDIDKYAIITCNDDEIIVTRSNQVALYSDYKPSFGRFSFFEVRDFDFNFYSTMYSEEGELDFEFKEYNQTTPGIVPPQYTGVSSNPQIRNFYDNGGFYNLIGLLNDAEDQNPNDEYIKSEYVRLEENFLTSQAAASRIAPYINKWGWVNDGKDVRNHPYRLDVNEAFGLNNFAPSKWDKIQEASGYSHEWYYLSEFPEYFTNDAIESSWSYCVKAPTDNIEANLFTGQVFVPGTFQNVNINYFDEYFIVQKFDFGNSNIVEIDRQLRYGRFSGGNEDNFAEAFLRGVRIIAKPKSIGTEKPDFNARSLSYVRDGSFNDYRFSVIMVPNLPDSPPFEIKFIKNEKWKTIVMFISIEYAVKCLNDNTKSIIDRTSLYSLNSNWAVNPATCAPQNIPNPYTNTTVSGAIALTQSYLEPSGDIIVKWQPDKDGVLPDLINDIRILEDGTYGEIKFTIGFDIFVINGIINIENFNTLRVAANGFTKNGNVQSIPSSSPNNVELRAATYQINKGGYLQYTDRLNSASFGEMFDAVNQGNPSVIYETIATDGSQLRNNDGSLAQTFSIELRAQADILKAIYVGVLPDPAKPTAFNLTDVVGYDLSLQKKPRLVPIARHAGYYAPYALPLLSFRDPYQNLDFNDVTGGTGTSLIPDADYKIKVAELCKYKNAQFYSKDPTFGQVQNFFYHKVNEQDPSTVLELSRESAFPSLYPLINEIGIDYKDFYAFSSNWEPSYFIKSIDKSQIQKIIGTRSMLERKSFFGSKYLKVPETIILETFKPDPFVKGAIRQPSLIDGTFMYLDQPSVTINKKTIQREGVVSTRSIKKKPSAPVINFYLFNQKRLMEHLFTPIKEQFLKYVNELYGWGNLETLDDDVNQYIRENILKLYKVEKVELYTLASRTKGGSTYTTAELTDAQKINNGLTINNNVASKTLNTNPFDLRLIYNKRTGFSESFGFSVTIVKK*
Ga0115003_100005656	F004606	GAG	MKTHRIFNKGQNVYCLLASHTNPNILLPVKGIILDSKWDPVNPLYQIRIIKFYDNMKFLKQHFFDMNFRHLFENRARKMILKAEDFKTAKVLENRLNEKDRERFYVVIESVMCTKTKVGLSELFEKVQLYMISKNLKEIRDISTRPFFKGPLSLDSPKEFDARYKNSWSDKFEKSNLDIDKYLNSLG*
Ga0115003_100005658	F017335	N/A	MNIKSLTLKNKLSIEKTGEQYFDLTAPSFKYRRELGVKALHYVTQDQVGRIDKISEKYFGTGQYIDAICVINNIFNPFSVNEGDILAIPQLKNENLVYKRPNPASRPSATLAQYVNTEQQSEIDQSRIQRLIQKAKTKKTGVKAPIPPNMLQQGQAAKVFEGGKIKLGANLPTRNSTNTES*