NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0116230_10005391

Scaffold Ga0116230_10005391


Overview

Basic Information
Taxon OID3300009510 Open in IMG/M
Scaffold IDGa0116230_10005391 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12545
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022136Metagenome / Metatranscriptome215Y
F025203Metagenome / Metatranscriptome202Y
F063279Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0116230_100053912F025203N/ALNCENINTKKEITKDKCIHLGIKDDNVPPKFVIVVENASLKDHNLYKSELENIEL*
Ga0116230_100053913F022136N/AMGFSNIVGLKYNPGITYVNIFNDGKFNNSMWVSPKFVLVYGFIMQILYVMYIGIVGILYHDVGIVMGIQNHNINFKGAM*
Ga0116230_100053914F063279N/AVAKITIYHKAHTQTDGSFTHGEHDLESIFCMFHYAPRMSQALKDHIWAQLSLGYTTKQIYDKHKVIWWEHVNVGQSMT*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.