Scaffold Ga0123573_10295651

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0123573_10295651

Scaffold Ga0123573_10295651

Overview

Basic Information
Taxon OID	3300009509 Open in IMG/M
Scaffold ID	Ga0123573_10295651 Open in IMG/M
Source Dataset Name	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Novogene Bioinformatics Technology Co., Ltd
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1570
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment → Mangrove Sediment Microbial Communities From Mai Po Nature Reserve Marshes In Hong Kong, China

Source Dataset Sampling Location
Location Name	Mai Po Marshes at Hong Kong
Coordinates	Lat. (^o)	22.498889	Long. (^o)	114.045833	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050004	Metagenome / Metatranscriptome	146	Y
F087024	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0123573_102956511	F087024	N/A	HFYVEAGLKEDPQTKTSIFTPEYLKKASQARSYEREYLGVWGKNVGDIFSPEGIELCCGTEYEWEANDDSNDRVIGIDPGFGSSEFGICIMQKRKGKKSVIYAEAFERASYIDIINNIRMLSEKFRTKRMFIDGSWSEGIRDLRDKYHMNVQAISFAQYGEKMLNYAANNIDFQNVEIHPSFKKLKMQLMTIKFNKKGGTDKTRQNPFDLGDAFLLALYYYKMGSGTLAGVG*
Ga0123573_102956513	F050004	N/A	MVLYLKMDQNRWAQRDFTDNAAYDLSGTVYDDNTLTTTRDISGFTPTFRIIDNRGELIFSNQQNVTLNSDGTFFVRFGEGLSPVVTGTHVVRLRLEVAGTRLTCVGVNGSDQIFFEHD*

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