Scaffold Ga0123573_10001221

Overview

Basic Information

• Taxon OID: 3300009509
• Scaffold ID: Ga0123573_10001221
• Source Dataset Name: Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Novogene Bioinformatics Technology Co., Ltd
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31280
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (68.97%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment → Mangrove Sediment Microbial Communities From Mai Po Nature Reserve Marshes In Hong Kong, China

Source Dataset Sampling Location

• Location Name: Mai Po Marshes at Hong Kong
• Coordinates
  • Lat. (^o): 22.498889
  • Long. (^o): 114.045833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007982	Metagenome / Metatranscriptome	341	Y
F021565	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123573_1000122118	F007982	N/A	LTLSALVLAMLAACGAPAPAPQDKEAAREKGRDTDETVFDDMIQTQDRARAVEDVTLGRKAEMDAAIEQSEGDAAPDER*
Ga0123573_100012217	F021565	N/A	MAIKYYAHFLVDEPDPRGLQEYRGVVELDGLPRRSGRELREVANIIARNMGRSQRDVKVLQWARLH*