Scaffold Ga0123573_10000596

Overview

Basic Information

• Taxon OID: 3300009509
• Scaffold ID: Ga0123573_10000596
• Source Dataset Name: Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Novogene Bioinformatics Technology Co., Ltd
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48909
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment → Mangrove Sediment Microbial Communities From Mai Po Nature Reserve Marshes In Hong Kong, China

Source Dataset Sampling Location

• Location Name: Mai Po Marshes at Hong Kong
• Coordinates
  • Lat. (^o): 22.498889
  • Long. (^o): 114.045833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000982	Metagenome / Metatranscriptome	814	Y
F004285	Metagenome / Metatranscriptome	445	Y
F031143	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123573_1000059611	F004285	GGAG	MSLSWISNRSLKLSPRVRLVADGEAEALRRKLEDLEWRPQNGFLKDQVIEKVPLSGSRASRAA*
Ga0123573_1000059627	F031143	N/A	MVKKAWTAYAALLTAAVVIGEVANLAQGGTVDVRTFANWIVTGVLLVATWGYALQRRVGAQYYWRGACWVVLLASLVTMIPAVLAGGAAVVVVAALLPLVVPAFIASFLYAYRSPQVWGQPADQA*
Ga0123573_100005966	F000982	N/A	MASIKLSSSASRLLDHHRLRGRAYPTQKYWDRLYQLLEEEAERRGKTPPPPAMTHALDHEPTDGDKMERLAEQVAWADRNQLLHRVQEFLERMPTSCWTRLDK*