Scaffold Ga0115567_10181651

Overview

Basic Information

• Taxon OID: 3300009508
• Scaffold ID: Ga0115567_10181651
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1374
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050424	Metagenome	145	N
F090413	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115567_101816511	F090413	GAGG	MKYKHIKGLQLQKPSYLSTPNSKIRELLAGKEVELEKENLEEFESLGVQVQPVTKQKPKKKEEK*
Ga0115567_101816512	F050424	GAGG	MGIEFENIYKDRVIDTIQKLLKQNLASIPIVFDEHRGQESFLIIPDADTFIDYASNVHIREFTTVINYQLRKGGEYTKENQLNRLTMIAEVVKRLLFDNRNYESGNITFWYGGQVSSVEYTRDEDDETISNVIITFQCNTNEAIS*