Scaffold Ga0115567_10112168

Overview

Basic Information

• Taxon OID: 3300009508
• Scaffold ID: Ga0115567_10112168
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1867
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002093	Metagenome / Metatranscriptome	594	Y
F022908	Metagenome / Metatranscriptome	212	Y
F071273	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115567_101121681	F071273	N/A	VDWDVDADASREAMEAVSNTILSRATILAAGAVYDTGTKQDFLLEGDYTSTLNNFTSLDGTVSGTLAQVLVEDIVNLGTVDSINFGSGTVAVTIKTTFKYA*
Ga0115567_101121682	F002093	AGGAG	MAYDTSLPAGGPGNFVSPNTAHEADGVEVDFITVDYISAMNGEVTEPRAAANTGGLELSMQAIQNQGVNILGKGVLSNSNTEQTYMVRRDSLDTISSTTTVAAIQAAVRALNAMTPDKVTATISSATAADRDMGDTSVGA*
Ga0115567_101121684	F022908	GAG	MPTHLDEAIKIIIGPASQLRDKTPRIYAMPKQEHMPKQFTNLKRMRFLNHDVSAGRNIKRWLWRDYSPEIILQQPPFDKCEDQSEIFTLIRKPDDRWWSGIKDMFYFMPWYTWWTNEQIMQQWPHFTRGTFRLHDVMEAVKPQHLIKCDDGLNDRVVKFAKEHGLLCYGNIPHEKALRHSKPDIKKLEDNGVKELKAWLRKNPDRQK