Scaffold Ga0115572_10376511

Overview

Basic Information

• Taxon OID: 3300009507
• Scaffold ID: Ga0115572_10376511
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 797
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039870	Metagenome	163	Y
F061353	Metagenome	132	N
F067690	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115572_103765111	F039870	AGGGGG	MRKFKVYIIVYHMIDDIEANSMNEAQEKASNDYIWDDHIKDVIIDVEEVSD
Ga0115572_103765112	F067690	GGAG	MEKFIELELMLRDGGSYYLYDSRFAVTSGTRRNQINAIDYEIQHYSSVNGIAVKHTYEEVIAMIRKARGEDNAKV*
Ga0115572_103765113	F061353	AGAAGG	VDKAKDDFESASDEMDALLDRFEAAGYNSGAAMGGAMQAIIFRMAIGAPDAATALGFMGSCMSTAALMVTDADETEH*