Scaffold Ga0115572_10206270

Overview

Basic Information

• Taxon OID: 3300009507
• Scaffold ID: Ga0115572_10206270
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1134
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F020020	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115572_102062702	F020020	N/A	MRKYIVEFTHADGKKEEIELTTDRLEWSIEQWKRNRSIIKHEILEEGSANSKSMLFG*
Ga0115572_102062703	F001222	GGA	MKRIQELISMVTEAAKINFAGHSFLLKVDTNEDPQKKGVKVQFIPTEFGSLTPTQQNDIAIELEERLEQGLAEFELRVERDRNLKDKTIIGFFIYIEYFDKIIRKALSHQNPEAGEVEPEEPEL*
Ga0115572_102062704	F003188	N/A	MIDPKKRLRQTLFSIHPLSYRIKIKSPDKSFMDKKLFIQVILQLRKIEDRRDFMADEIGMDMTAYEDQFFNVIENLMKMHFSKEQLALIQMYLYQLTPDKEWDGTITLENNRKETTHPFKTPEDVWKVISS