Scaffold Ga0115572_10046810

Overview

Basic Information

• Taxon OID: 3300009507
• Scaffold ID: Ga0115572_10046810
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2768
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F010275	Metagenome / Metatranscriptome	306	Y
F071638	Metagenome / Metatranscriptome	122	Y
F087763	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115572_100468101	F071638	AGGAG	MDIENNIKKFNSNEKARRYIKELGFNLKDCHCFKEDKSFLYTKKFSKEQVYLRSTYDFFSAGSMEMGTVWTVQQF*
Ga0115572_100468103	F002593	N/A	MEIDMSKLIYSKNGSATTKSIRSASPMLQAIWDRSHMFGANIVRVRANLDRFGNDTGKTFNSYHHEKVSVYKQKDEVHESNALYFAQKIPVTKSNKGMQILEVATNLDVQDTLDIIDEIQYYSETSFLGRLWNRIRYGTPMSIAS*
Ga0115572_100468104	F087763	GGAG	MAQMRVKDQDLIVEQVVAKIETTELDKFKAREDVQSIQSVIDTRIDLIQQLYYTFKQYEQNIKDDIKELVELVDDFQEVNGLKESNHYANSTGFRLSNVSNYGSPDVPEYKIDWKLPTNTKRELAVKLRMQTMGGDFDVYKLIDELTSEFSS*
Ga0115572_100468105	F010275	N/A	MEITMSNKINSTLMDNMRDNVHELWVIEGRPDLEDDCLQYCYDNIDRPVPITMIEFLSIHCSQAVSTADYRQMAMESLN