Scaffold Ga0115572_10021355

Overview

Basic Information

• Taxon OID: 3300009507
• Scaffold ID: Ga0115572_10021355
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4480
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008346	Metagenome	335	Y
F058166	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115572_100213551	F058166	N/A	SIMDILGGMSNSNGDSKDYYLAFKTADQQFFVNGKTPIEFKYLQLDPATFKSGWGRYAGEYQYQWDSKFGQASPKPAEDWKRAFSCVVMPYGHDHALIWSRFTFAESSAFNKILSSFWNQMDANSDSLPVVEYKGSKEIQVGIGRSSELDFKFSKFAPRFDGFEIPPFYDNDGDTSVDDGFKSPNEGLADKVAEMVNQNELTDDDIPF*
Ga0115572_100213555	F008346	N/A	MPIKLKPSAKIRDRATGKLSIEHYYLKCMTLSELNDYIESSSAKKKVIQKCKNEIIRRHK