Scaffold Ga0115572_10004362

Overview

Basic Information

• Taxon OID: 3300009507
• Scaffold ID: Ga0115572_10004362
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11026
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (31.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037985	Metagenome	167	N
F043079	Metagenome	157	N
F079232	Metagenome	116	N
F083239	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115572_1000436213	F079232	GAG	MLKVKRSKKTKTSMYGIEITKPWSKEMYAHNERTAEHLKGQILTAFQKTYASYGTTPPMDEDSLRDMANEIAGYKYGEGFSIQDIVEEVLKNLEHMPGFQLHETMYYLHHKGYVKTQAMGLIGYQPDPHLVPYWEVK*
Ga0115572_1000436220	F043079	N/A	MSWKIVSKITDTYDFQDGSQNTYIVYVQDSAGINIAAKEAYGIADRTKVTKELINEYQEYGIVKIEHQDH*
Ga0115572_1000436221	F083239	N/A	METMTMTENYLDLTIDEVYDVITSVNVWPQSFDMSKKIAFMNHMITYFEKKEEYEKCAKLQRLIHVMEDS*
Ga0115572_100043624	F037985	AGAAG	MKKITTASKSQLRLRAIGCAYTLLYILGWPLLYGILPSYSSYYVFGGIYFTLATSLMAWSLWMHRDIKWSVPAYALVGVALFDCVDYWMLHNIVAIIFFLSSTYLMKTDKRFDWIGDISVTWYILLVMPGGVFWFEVIQAVLISWFHWSYVKRLWKVRNERE*