Scaffold Ga0115572_10001699

Overview

Basic Information

• Taxon OID: 3300009507
• Scaffold ID: Ga0115572_10001699
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17834
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (31.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F020020	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115572_1000169910	F001222	N/A	MNKQLKNYIKNIISESARIKFAGNQFILKVDTNEDPQKKGVKVQFLPTEFGSITKTQQNDIAIELEKRLSSGLEQFDMKVERDRNLKDKTIIGFFIYIEYFDRIIRKALSGQNPSAEFKPNDGNDNEQI*
Ga0115572_1000169912	F020020	AGGA	MKKKYLIEFTLSDGSKEEVELVTDRLEWSIEQWSRNRNVASHQILEEGSSNKKNMLFG*
Ga0115572_100016998	F003188	N/A	MSYKNKIRRILNEQYDFRVRISSKEIDRSVMQKQLFTGVLDQLRKIEDRRDFMLSEIGMDMTTYEDQFFSVIEDLMKIHFNKEQLALIQMYLYQLVPDKEWDGNITIQKNKKEEIVAFKSPDDVWNVIKKFE*