Scaffold Ga0118657_10431332

Overview

Basic Information

• Taxon OID: 3300009506
• Scaffold ID: Ga0118657_10431332
• Source Dataset Name: Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Novogene
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1724
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment → Mangrove Sediment Microbial Communities From Mai Po Nature Reserve Marshes In Hong Kong, China

Source Dataset Sampling Location

• Location Name: Mai Po Nature Reserve Marshes in Hong Kong
• Coordinates
  • Lat. (^o): 22.498889
  • Long. (^o): 114.045833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075043	Metagenome / Metatranscriptome	119	Y
F092306	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118657_104313322	F092306	AGGAGG	MPATFYAGTNWQQSSEPHTIVAVQESDCWPVDDRSGSGTKDQLAPGLHPVIAIGGRTAADGRPLNLTGVVVSYAGTGSGTATDRVEVNVADGTIVRQYVVNILTYSGGSANTFETAPVVGQPVYVDDSDDLAAGDTLSMSPLNDADVRNPLAGYLWYCQDEIADGLAGGSRSTSTFDTSLANELTSQEYCVLLVNAARELS*
Ga0118657_104313323	F075043	N/A	MKEIRKHQLSERKASAERLAQVDGLFAELDNRLSLSQGIGETTEVFEEVMTSADFTYAILEFVQREAWPGYERKGFAFEPLVKMDNVPNFLPVTRYQKRAGVDDLEYVGEKGQARPGSVDDATKRQYQVYRWEKQYDFSMEAIVNDDLGYFSDQAQLMGQAARRTLEKFVSRMYTNATSIARLVALGALYSQNGRLTSARISECRMAYNQRTDARGEPINASLAYIVGHSGLADTALQIQSSELVPELATNGANVVRNNWQWIEDPYITGTAPNLPWWGFPDYRANGVIPFVLARLERWPAPRILRKRTDVEAIVQMGG