NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115564_10293313

Scaffold Ga0115564_10293313


Overview

Basic Information
Taxon OID3300009505 Open in IMG/M
Scaffold IDGa0115564_10293313 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110523
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)816
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059445Metagenome134Y
F098210Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0115564_102933131F098210GGGGGLPNKITIGRENWVRMMYCMKHLMKLHPEYYDMIKPFYDQMYDKYPYNELDPFNFEDNYKVRPRTNIERELDKLADLNGKEKIETEQEFQSELNQLIWDLGMTLPS
Ga0115564_102933132F059445GGAGMNLNELVDSLIELSCHEMPEEARKSLDDAIDHIVSNMNDNQLKDVLGNTILDDIEAKHPRPVWKEEGDEEEIKAIKSLMGGNIAIA*

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