Scaffold Ga0115564_10106185

Overview

Basic Information

• Taxon OID: 3300009505
• Scaffold ID: Ga0115564_10106185
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1557
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F021674	Metagenome	218	Y
F081542	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115564_101061854	F021674	GAGG	MERETYNSRLKTNPEDIPVGSLLRVKKWCRKNITIRNNGEYGILALSANGKYITHDVLFPNGTRCIYMPLNWEVVSYAG*
Ga0115564_101061855	F006383	GGAGG	MRDKMWEVQQPGTLLRGRSSHQYGRLALVLEEAYDGRMPSNGYPPHRYVKMQWVATGERFEEMLTNAHNCFDIVSSCDTLRPEEN*
Ga0115564_101061857	F081542	GGAGG	MNIFAIEGNEETGEIDWEKSAQSQDNLRVVKMILESCQIMSTVIN