Scaffold Ga0115564_10022584

Overview

Basic Information

• Taxon OID: 3300009505
• Scaffold ID: Ga0115564_10022584
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4176
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015659	Metagenome	253	Y
F016879	Metagenome	244	Y
F017045	Metagenome / Metatranscriptome	243	Y
F049759	Metagenome	146	N
F058519	Metagenome	135	N
F096058	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115564_100225841	F058519	N/A	DLFMANHLKIIADCYKKFNITNTSVSAAKNPPHIRCFQKHYLTKEQNSKCANASLTLGTIGHDIVEKAIVENLTIAECIQDKKIQDKINSYISFDKKDQMKFEFGIKNLEAIGNNHIENLKELPKQKWKTEAEYMKWIDPINVPFRMFIDLTGETHVNDIKNKFPTVKFSPLKTKQTKDNPNRIGDWVCSHPKIDQRAFTSDLMQIALYSYTTGLKPSLSYASATDRILFTEDNCEELKPENLKMWLQELIAYEIAWEKKLKAADGSLEELMWLCVPDFSDIRKKSFWYQGVPEEYIKGYLNFYV*
Ga0115564_1002258410	F096058	N/A	MYFLIFQKNNKFITYTNQVFGNEEDAEFFAKRSFKRKDVWKIVPYDKEHIDKYWYKF*
Ga0115564_1002258411	F049759	N/A	EEWNFDRIKTIISKIPSEPYQLMFKLMAETSCRPSEARAAQRKNFHFKRNIPVFEVTNSVDYKKGLAPPKTEAGYRELEISASLKDQLIDYMNTLPEDQQCIFLNSKGKFHDLKNMITCLDKAVESLNLKLPVARKTYFFRHWNVSYWCYQGKYTNPFDLATHMGDLDLKFINTNYIKKYSVSKESVKYSEHQNNNYNWN*
Ga0115564_100225843	F015659	GGA	MKERTLQDAIVQFRKNIDDSDYANLGAKGKYLTVPYRIKFVRDFFGERMSIQTDSTELANGSHKFKANIYIDDKLVSVGESKQLKNTDKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPKVKEVAKAKPIVKLVPKAKVNIEELANDWIEVLKKTAENSNSLSNYEKNLNVLRKEYISDLHQIYTDLIQQQRIDSAYISLQKQITNRKI*
Ga0115564_100225847	F016879	AGGA	MSVIKESFFEASFKTIEEFDNAEVAAVSNVGDYAELTITDIKLDKSVIKTNQEKESTDGDKEQQLVEKI*
Ga0115564_100225848	F017045	AGGAG	LRRYDKLNRLHSEIMQKPKQNSGQCVHSLQAFKKYIKTFRQIVLVENGDATFKYTQL*