NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114946_10029907

Scaffold Ga0114946_10029907


Overview

Basic Information
Taxon OID3300009504 Open in IMG/M
Scaffold IDGa0114946_10029907 Open in IMG/M
Source Dataset NameLake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3202
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Synechococcus phage S-H1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: Hawthorne, Nevada
CoordinatesLat. (o)38.7Long. (o)-118.7Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010762Metagenome299Y
F021761Metagenome / Metatranscriptome217Y
F076034Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0114946_100299074F021761N/AMITNPWINRIAALVMLVCIYYAGYAGGRDQATLTYQQQAACNLNLKP*
Ga0114946_100299076F076034N/AMTKNSMIAIAPKQTPVINRLNEAMNQALAYAQAIRDNAQDDGQPIPSELVASFQDDYNNIIAALNEAHYLAS*
Ga0114946_100299078F010762GAGGMNEAALEIAFKEWWEASYGRPPGTHAVMTHAAFAAHILTLMELMQDD*

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