Scaffold Ga0123519_10016567

Overview

Basic Information

• Taxon OID: 3300009503
• Scaffold ID: Ga0123519_10016567
• Source Dataset Name: Hot spring microbial communities from Yellowstone National Park - Yellowstone National Park OP-RAMG-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10216
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.61
  • Long. (^o): -110.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039213	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123519_1001656712	F039213	AGGAGG	MRKFVTVSYQYGTITVPQYSRIRINLKSGRMIYGFLVAEVSNNFVVIIPSNLTFFQKGIVKGFRTSIYKGAIRDFKFDKGAIVSYSTNPNYPVANRGGNVNVPH*