Scaffold Ga0114951_10008095

Overview

Basic Information

• Taxon OID: 3300009502
• Scaffold ID: Ga0114951_10008095
• Source Dataset Name: Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8722
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.2
  • Long. (^o): 25.1
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021920	Metagenome / Metatranscriptome	216	Y
F038982	Metagenome	164	Y
F050860	Metagenome	144	Y
F085063	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114951_1000809516	F050860	AGGAG	MTDYTKLNDRIVKQAWEVSNLTLTEEMKTRLFQNKIRRATEMLAARNIDTTYHQIED*
Ga0114951_100080952	F038982	AGGA	MSKLSDTIKRALEKKQGIHHPEADDAPAVDKKAKRPATPAMGKKPPTRSAGRGR*
Ga0114951_100080957	F021920	AGGAG	MAKPQQTASELSRTLAGQWSKSEKRAVASRSIMQANQRTKAINKAFKNNQILNK*
Ga0114951_100080958	F085063	AGGAG	MKSRIDSRGPVIDTERCVREAGGGRYDLVLIAAQRLRELKRKHRDTPTRYVTCVDALMDVQAGLVGLEDYLAKVN*