Scaffold Ga0114951_10004798

Overview

Basic Information

• Taxon OID: 3300009502
• Scaffold ID: Ga0114951_10004798
• Source Dataset Name: Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12868
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (67.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.2
  • Long. (^o): 25.1
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020298	Metagenome / Metatranscriptome	224	Y
F059611	Metagenome	133	Y
F060589	Metagenome	132	Y
F079582	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114951_1000479817	F059611	GGA	MKDFSLPYITAKRLLDEYYQAMIAQDKALACQIANNLVEMTLKLEDVAHAD*
Ga0114951_1000479819	F060589	AGGA	LNEERYRHQCAVRQLIMWRRQWGLKAFREYMNKYKEKLGWQLIRDFEDQWTKGNRADEKGEWK*
Ga0114951_1000479823	F079582	AGGAG	MGMNMHDRWYEPEDDYMDSDELQAEVADLMKDEYNPCKWENFNDAFAATQNKDDIAFIEQALEKRDFEALGRKLWNMSYEYMENFATGKVTGQY*
Ga0114951_100047986	F020298	N/A	MTSPNIYVPYPTPQDEQQLQADVSAIVYQPGVPQELQDQYTNMINSPTFVDDVNEAEANSDSMANE*