Scaffold Ga0114951_10001935

Overview

Basic Information

• Taxon OID: 3300009502
• Scaffold ID: Ga0114951_10001935
• Source Dataset Name: Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24446
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (19.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.2
  • Long. (^o): 25.1
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066397	Metagenome	126	Y
F093285	Metagenome	106	Y
F104346	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114951_100019352	F066397	N/A	MSKSTSIDINYLSYACDGQGTCAWSLSAGSPDIKQVLKITDNSKDFLPPNPTSYASILKIADNAIITLEGLVIEQGSECSVDINNNATAVVEGVFGSSVNGTGNQIFSVKGKSVVSIRGILKGAGNRLNADILVDNWSDQNYSGSVVDITDAKHETGRKLNVVYRIGSSKIIGECNKLLWPSIQLTTYFYIKLIVRNIMRIKQGQKGPSFL*
Ga0114951_100019353	F104346	N/A	MKKLLTLTSLALIALVAKAAPVNGNLDLGFTSKLIQQGVLVGTNYATAGVETNLYGIDLAVTAFDKISDTTTASVVAGKTVTSTDASGLKRVYLDAGYKFTSPLADLTLGAELRHVNTTEAAGSANHNFLPFVKLNGSWFGGHLNWEGRALNDTYNRSNNFEFGVNAPLNTVGGLKIVPALVLGFNDPGAATIAALKNVKKYYQPGIGLEWHGVTANLFAQRTSLTSSDTQITGYNAGYKFKF*
Ga0114951_100019354	F093285	N/A	MKFQALMEQYGMLKQTKRLFYPRNLSLSDKFTKALREELLLQEKAGIPPEKFAHKLNRAIIFLVDEHKKNLPPK*