Scaffold Ga0114951_10001044

Overview

Basic Information

• Taxon OID: 3300009502
• Scaffold ID: Ga0114951_10001044
• Source Dataset Name: Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36104
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (80.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.2
  • Long. (^o): 25.1
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010759	Metagenome	299	Y
F017591	Metagenome	239	Y
F086513	Metagenome	110	Y
F103136	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114951_1000104436	F086513	AGGA	MNKETKPSVWDTETESVVTKATREVKGSRAPKPETPKTVEQEPLYDLEGLMTDFPTAKELEKFVFDQTGIVLQLKGRSNKFKYQTAMDVLNGAEPDAALLGSENPYLDKNDLIPVDEPRPIPARPGEVVGQQCVASFISKTFPHPDNDWKSQGQKCEVVFRKYMNNAITYEIIGPISTRPVGTRVNKFGKEVPEKYTWVDPRTGEQIIRSSTGMLTPIGTRLRQFMTKQKINKSDYWSTWIDRDFVIGDGGNILGDPWGDLK*
Ga0114951_1000104439	F103136	AGGA	MLDLRNVVISNLNDHSGEMARFVKMKSLLDQKCAANLRLLATKNNINRTADYHYLNLAIEDSTAPVNGLDYIHPVVKPVVDYASSVITKGIAQNGEINFEFVADNEADEAAARQATEMVHKIINQNNDPHFILQHWTMDACLHKNGEMMVSPMREQIVRYVKTQGTLDQLRAFETQAEEAGLRAKRRSRRKLSVDHTRVLHETQQFLQGIPAVQRAQHIQDTMDKLRAGADGDFESAEQVTDLPDLEVDGAHAAIRDSVNRNTIYEASYKMTGYNLNIKFRPIAQHYWMCDPTVISIEEQPFCGYYKPMSIQEATELYPDIDLEQFKIYAEYSNVGSYQAGSLLNNLAIHARDSVPINGLPAQGYSAQEPEARQVTVLTVWNRYDIDNDGELELIELIYSGQYVISAREVEFIPVANMVPKPLPQNFYGMSIAESVIPMQEYMTSGHRAELQLGLLQSTSRIGVKPDRLDFEELADGEAAIFILDSKFNPATDIYQIPGPTGDIRFIDQAMNRLQQDSMAMVGMTTPQDVFNPEVMDPGNSGAKLNLALSPNQIIQDNTVKNAAEGLKDAIWLIWRTLIAHGDDYGVKKLAQQFHPEGRAEFMDYENFDNMNYNERKTIHIDLALGMKSEENSLQRLQVIKQAQMGLTQEVTAGVASGALTVNSFKKIRKPYEDMLYVLGVKDCDTYLPTADEVMEMVKQSQAAKQQQGPSPDDQKKTADAQLAQARAQEIIADMNGNDAKRQLEGYALMGQHKARAF*
Ga0114951_1000104443	F010759	N/A	MNTTNEFDGYNDKSYLNPEDEPEFNEDSHRWDRGGLATDENGIADRLLKNDKLYNTMKGDWSREGLNLSKNVKTTTGRVDGKFFMTKEQFNIPRIIEVCQDYRKRAEAGYMDPLAPVMPDGKLGYKWMELPEVIAWEISTKYFGGMPWAAIKRDRGLKAQFYRVVEKEYNAFVCYPGGRLPIPIDVPYPTAVGQKAFFEGANFAGKQ*
Ga0114951_1000104444	F017591	AGGA	MSTFIPDANGLVAFVESFTGSSNDQEIKDCIYLAELSMRNIELPALRTNPWTTTGTADQWGAVPIPSDMNRPILFFNQGPQSSSSTGAGPWIVYDRIGDRDMITEQLVQNLYLNPVNISEVYRGQFSEVGQKYEFTPALTQGTVINLYYFTTWPLLFTVESDGVTQVLNNVVLQSWPEGYIYGTLREYYLKRKMPEDAAVWDKKFQEAWNIVEDQNNKGKWSGGHNKLTSVFQPRRNQRYSTR*