Scaffold Ga0116229_10028641

Overview

Basic Information

• Taxon OID: 3300009500
• Scaffold ID: Ga0116229_10028641
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6388
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004020	Metagenome	456	Y
F021460	Metagenome / Metatranscriptome	218	Y
F104312	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116229_100286411	F021460	GGA	MFSISAQNFSSIDDDHKELSLSKGIDFKTKTLNAWISFNIDPNDMKFLSHVYLFMIYTIAKL*
Ga0116229_100286414	F004020	GAGG	VVKLHFEVDMEVRMVDIINMKVKLMKVDEETLEEGEVEEIVEVVVEVTEVNNQIIIQIATIARNLGTWQKIVIKGSMMHEMESCNKGIMHQLGIKVMSNCL*
Ga0116229_100286417	F104312	AGAAG	VSRDVVFDEMVSWYSPLKVVEDGEAKNGDVLSNME*