NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116229_10023283

Scaffold Ga0116229_10023283


Overview

Basic Information
Taxon OID3300009500 Open in IMG/M
Scaffold IDGa0116229_10023283 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7537
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida → Dicranidae → Pseudoditrichales → Ditrichaceae → Ceratodon → Ceratodon purpureus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018305Metagenome235Y
F022136Metagenome / Metatranscriptome215Y
F100223Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0116229_100232831F100223N/AVTLCEHATSHMRVLPCNIYNTRLTKANAVSHPRLVLHRIENGLGNSVKQLKDWHEIMFNHTNVRIKQCRE*
Ga0116229_100232834F018305AGGMDKVPIYLCYWHVLKAWCLRGTEKIKDVEVRGGILQDFHDVMYMSINHGETIDNFKEHGRVHVQENLHKHRPGHVWTNYFWTYYHQFRK*
Ga0116229_100232836F022136N/AMGFSDIVGLKYNSGIAYVNIFNDGRFNNSMWVLPKFVLIYGFIMQVLYVMYIGTIGILYHDMGIVMGIPIHNIDFKGAMYVLHFGFLLNDECL*

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