Scaffold Ga0116229_10015169

Overview

Basic Information

• Taxon OID: 3300009500
• Scaffold ID: Ga0116229_10015169
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10559
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003475	Metagenome	484	Y
F012093	Metagenome	283	Y
F057064	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116229_1001516911	F012093	GGAG	MHEVMQKFVSTPLFSFQDLKLSTRDIIAILKDTLNTTSGPLSILDPHATRVPSNTLERHSISSRVVNGVCILVTSYSMAKLVGSPTFDFTFTYKKGIKNTSLVDLLLNKGVVDSHSFHKVSHSFPKVVLSKRTSMATGVAIVDNTGSVIQVGRHTPRVVFLDTSAQPMILRV*
Ga0116229_100151694	F057064	N/A	MVQTCKKGLRKISLIRNKEDWDLALPYIAIGYKMSKHASLSHFSPYFLLFGRHPIPPFSIVVQMYQVVDLDSPTTWAKVIVERAILFRRVMPMAMENLSIAQH*
Ga0116229_100151695	F003475	GAG	VDIWEDLDTLKFFQHEEYFPKLHQVIEIAYNIGPNAIHGGTITSSDAYHKATKWFLHRMNDLVLFKRYTQSLDTLELSIFIAFLILITIGKVCMFKFETSLLGVNNVIK*