Scaffold Ga0116229_10004555

Overview

Basic Information

• Taxon OID: 3300009500
• Scaffold ID: Ga0116229_10004555
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22719
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Klebsormidiophyceae → Klebsormidiales → Klebsormidiaceae → Klebsormidium → Klebsormidium nitens (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015049	Metagenome	257	Y
F086501	Metagenome	110	Y
F091207	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116229_100045554	F091207	GAG	MGFQAITTNHTKVTRLECNALLGRGMDLNSLTWLLVTCVLFQMYITLTLIQSTYSSSDAITWHLDQIHLPIFNTLHFTLSVGGEEVPCNLTQVVSDTCGGTSAFGETITTFYKSAQLDSGKPNTLSSSNTLSNSIPCVSNYPFIMGN*
Ga0116229_100045558	F086501	N/A	MVGEYVLSNAHNYSLTPEFATSFCPSYVVAQEASVAPKVSATRQVIQTDGLASGSSFITKARGPQVVMPQSFCPFNTKEERTLLARGEETTIPQAVRASNSHVLGVHVHQENTQFSIDRLMEC*
Ga0116229_100045559	F015049	N/A	MEVNSSFGKNKKFSGRPCTISLREFKATFSTVICELELKYGVNYTEAFAFKQLARYVHYEALDVYEQHSAKILGVIQIPNPIYAIAIATTSQATLQATIAHHETMPNNPDSIPNSINLSPQQLIIATTNIPPTIDAVAFADPMGEFLRVFELEFLVKKFLKNLQLTTFSQ*