Scaffold Ga0116229_10003370

Overview

Basic Information

• Taxon OID: 3300009500
• Scaffold ID: Ga0116229_10003370
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26191
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (47.06%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003475	Metagenome	484	Y
F009583	Metagenome / Metatranscriptome	315	Y
F057065	Metagenome / Metatranscriptome	136	Y
F088117	Metagenome	109	Y
F091207	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116229_1000337018	F088117	GAG	MENWNDIIVEEDWASKTGLVPLFLMGWEALMLDVMLEFLNIFLIKGADIYFGHKDKVYAINKKLIIDVFGMCVEGYVEEPKG*
Ga0116229_1000337022	F009583	N/A	VPYLNSDSQTIIEKVALNSLKEMVLGLLLNFSILLEELLNSMVYIGVEVTGCNTIYSDGVKACAATSIPH*
Ga0116229_1000337026	F057065	N/A	MFKEAHTISYIQQANHKWIEGDEKETIYTQVIKSLRVVPTNIQHGPEVLQRFKVAHEPLVKALFSFENMEGHGKPIKPIFHQLITGMPFKEGITLLKLFGGIGTTFEALL*
Ga0116229_1000337028	F091207	GGA	VYHHASATWDEPSPKERKRAMGFQINTISHTKVTRLECNALLGRGMDLNSLTWLVVTYVLFQMYTTLALIQSACSSIDANTWHLDQVHLPIFNILHFTFSDVGEEVPCNLIQVVSNTLGSTSTFGEIIITFYESMQLDSGEPNH*
Ga0116229_1000337032	F003475	AGG	MGNTLPKLHQVIGIAYNNGPNAIHGRTITSSNAYHKVTEWFLHHMNNLVLFRKYIRSLDILELSVLIAFSLLITIGEVCMFKFETSSLGVNNVIR*