Scaffold Ga0116229_10002390

Overview

Basic Information

• Taxon OID: 3300009500
• Scaffold ID: Ga0116229_10002390
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30281
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (56.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023023	Metagenome	211	Y
F044864	Metagenome / Metatranscriptome	153	Y
F079506	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116229_100023901	F023023	AGGA	M*AQVAAEKGGIRACSLSQPHFGQVWG*SPTLGKVGGLESFGTPKCSELDSKAQNTSHWGVLGVIRKVLKRRYQKWPCIGNSNICSPSYGQKKGRESN*QLDSRPLKVGNRPLPDVALKSVTRRWKTLDESYNIDSRLVPIRVWGEELWPFKVPGV*
Ga0116229_1000239031	F044864	N/A	MKRALIGRENFETSIGQGEQAHGKVMEAYQRKKEYLVLGEGERRRMNV*
Ga0116229_1000239032	F079506	N/A	LLNKKTSTPSERKYHIVSATLLVFVNVGENLVMVDDVVTPSNPPISLVENEDLKEAPLDMNVSQWSHEKETSRRVVRTRVDCSAWDYRLSPNPHALTIYF*