NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116229_10001970

Scaffold Ga0116229_10001970


Overview

Basic Information
Taxon OID3300009500 Open in IMG/M
Scaffold IDGa0116229_10001970 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32816
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (52.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004020Metagenome456Y
F021460Metagenome / Metatranscriptome218Y
F069606Metagenome / Metatranscriptome123Y
F075588Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0116229_100019702F021460AGGAGMSFISAQNFSSIDDDHKKLSFKKKTNLKTKTETLDAWISLNIDPNDIKFH*
Ga0116229_1000197020F075588AGGALDKGNKLKEGHGNLPRERLLCVCGKEKKRRRKCEGEFLVFMCGEVFMEKVCARIKYERKLYVTSTCSKTFGFLVQLVVPLKSTVGFVIK*
Ga0116229_1000197022F069606AGGMLILKFELILFKNLIEMKLNKDVLGLHPKNLTSTSLVLEASSTK*
Ga0116229_100019705F004020N/AMEDHKKVFSTQILIEVEVEVVKPHFEVNTEARMVDIINMKVKFMEVDEKTLVKEEVKEVVEVVVEVIEVNNQIMIQIAITAGNLSTWQRIVIKGSMMHEMENYNNGIMRQLAIKVMSNCL

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