Scaffold Ga0116229_10000200

Overview

Basic Information

• Taxon OID: 3300009500
• Scaffold ID: Ga0116229_10000200
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67621
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (53.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015049	Metagenome	257	Y
F026776	Metagenome	196	Y
F032509	Metagenome	179	Y
F088117	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116229_1000020015	F032509	GAG	MNAQSPGSPNQDNFGTPLWESREKVPFGCKCNRETQRILYGGRWWLPPSSGRGESSESKVARGLS*
Ga0116229_1000020036	F088117	GAG	MENWKDTVAEEEWASKAGLVLLFLMGWEVSMLDVMLEIFNTFLIKGTYIYFGHKDKVYVINKQLSVDVFRVCAEGYVEKPKG*
Ga0116229_100002004	F026776	AGGAG	MPQSFHPLNMEEERTLLAKGEETTTPQAVRASNSRVPRVHVHQENTQFSTDQLMECQLQMHEMAQKFMSTPLFSFQDLKLRTRDIITVLEDTLNSTSGPLLIPDPHTTEVPSNTLERHLIGSRVVDNGRNLVTRSSMAKLVGFPTSDSIFTYQKGVKSTSLVDLLLSKGVVDNHSFHKVSHSFPKVVPSERTSIATKVAIVDNIGSTIQVGGHTPRVVLLDTSAQPVILGVQFAKKMGMLDSKLRKSMWQIRTVSRSVKEVLGESSDLIALNFNESTN*
Ga0116229_100002006	F015049	N/A	MEVSNSSGRIEKFSGKPCTISLREFKATFSTVVCELEFKCGANYTEAFTFKQLASYVHYEALDVYEQHYARILGVTQIPNPAYAIAIAAASQAALQVAITHHGIVPNNPNLVPTSINLSPQQLIAVTANIPPTTDASAFADLVGEFF*