Scaffold Ga0115569_10055216

Overview

Basic Information

• Taxon OID: 3300009497
• Scaffold ID: Ga0115569_10055216
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2170
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodobacter → unclassified Rhodobacter → Rhodobacter sp. BACL10 MAG-120419-bin15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074329	Metagenome / Metatranscriptome	119	N
F086822	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115569_100552161	F074329	N/A	MHQKDKKAYWRFTTRYNLLLLGGLYFLLLGLIIYNAMDRFEGVINVWKLLLYLVTLAGSFGAWIYCIRKSWLLTSFDSSLRVATMAYLFGAPIILLFETGDIVMAVMQMMGKWPFG*
Ga0115569_100552164	F086822	GGA	MLADAERECSNAGYTFNLKSDPILPIDLGGGDGVEAIFDYNALECKGYSTLFCGVRGCRIDLISSESIKSFLTRQFHTVELNDHSAVMFPVAPNSCEKTGAGCCFRKMYLINRMWMTEYEYKSEEYCEAN*