NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115569_10009408

Scaffold Ga0115569_10009408


Overview

Basic Information
Taxon OID3300009497 Open in IMG/M
Scaffold IDGa0115569_10009408 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6529
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Bathycoccus sp. RCC716 virus 3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098661Metagenome / Metatranscriptome103N
F099872Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0115569_100094082F099872GAGMSSSLAGLVYYLQDPEPATPTSGDDDIPQTQTKTYRKNMEIMYSTDCDETSNVSATEGTIDTSFGKSIKWTAPNIESTGTLKSGTDEKIKKLHLRNVVISTGSYKQHDENTDSEPVTVQVTDEKYCGLKLIDLCDDDKKYITDLDITYKPMEDDGKIEYKPSYASLWANKCVTDDPDSKQVQDATISGVCSTDNLDLKFNNDYESEDRSEEFKKSTLMEIENLKLVSGSYKRVKSDGTEEDVTMESKTYSGKHTINFCGEDGTEWAKDLKVDFEAIPESSTETYKIEGYRI*
Ga0115569_100094083F098661N/AMSKGLLLGGGALMLCILLIIFIAIIYFLTRPEKETEKETDESPTITDAGVDLVLNPGKETDKVEEYRIFKTEYALGEASAKNIDIKLKWTNGPTFTSVTSLIFVHELGTKKVRDNVTTTDNIESNASNELLFKGTDLTSEEVVGSNTIKIYWDEVKESNILKTISFTITQEHLDTPFNLTSVKNITIPVQLSSSQTASGDVVSTYTNYYILPYFTDTPVYNRKVQGDNNDGFNIIKNGSKQSIDGVDKFYIVQAIGKQFLSKDPDGNSLLRYDKKFKNQNEIFGNMNAVVKSAISVREAKPFKYEFIVKHLDYLATQPQHDIAAHIYNVKLYDFNYTLIKTITNNDIEFDVQPTHSLNRDDYLGAWKSNKYNVGDKLFTITSDKPVHMMKIQYVRPRYAPGWTIKENGIVRFEDTRNHGTEENPTPVDYRYTLSKFDDIGDLSYSGYYDISEMEDIGLEYGLMAPNNIHDWQYDINTYEDCRQRAGEKGYNAFGFQATGTKHCWLRQVPGTGGYTVTGLQSTGEGGKKDGHVSGCALKGRKVSNNCQQIFHYGGDSNLGRDGRNACNMTDNDKKYACDNDTELFGIGSGPSCGHKFYNTDKGKGSTISSTDEYDKFYSCETKNYV*

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