Scaffold Ga0115570_10358910

Overview

Basic Information

• Taxon OID: 3300009496
• Scaffold ID: Ga0115570_10358910
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 623
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020816	Metagenome / Metatranscriptome	222	N
F035272	Metagenome / Metatranscriptome	172	N
F098031	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115570_103589101	F098031	GGAGG	MKYSVELHVIQIHDVEVEATSYEDARNKAIQEWRNGYIYNDVGSPTFCKEEAKVVSFTSMPTAE
Ga0115570_103589102	F020816	AGGAG	MKVYEITVSTTVQIDSVDDYAQSKEHAIDIMWDRWGVYKDTLEITEVKTWEEDDEV*
Ga0115570_103589103	F035272	AGGAGG	MTYKQWCKLRELLTTLSDEVDSKVCDDKVSEAFDDVWDMVDEIDTTQEIT*